Characterization of Pectobacterium brasiliense strains from potato and vegetables in Israel

Pectobacterium brasiliense (Pbr) infects a wide range of crops worldwide, causing potato blackleg and soft rot and vegetable soft rots. This study aimed to characterize the genetic diversity and virulence variability among 68 Pbr strains isolated from either symptomless potato progeny tubers, diseased potato plants, ware potatoes wash water, or vegetables grown in Israel, as well as strains isolated from symptomless seed tubers grown in Europe, or diseased potato plants grown in France. The collection was typed using PCR and TaqMan real-time PCR analyses, dnaX sequence analysis, pulsed-field gel electrophoresis (PFGE), and pectolytic activity. dnaX phylogeny grouped almost all strains in a common genetic clade related to Pbr, which was distinct from the other Pectobacterium species. PFGE analysis identified two main clusters, including one major group of 47 strains with 95%–100% similarity. Maceration assays on two potato cultivars showed significant differences between strains but with no correlations with the source of the strains nor the status of the host (with/without symptoms). Molecular (dnaX sequences and PFGE profiles) and phenotypic analyses (tuber maceration tests) showed that the tested Pbr strains are not a homogeneous group. Analysis of the tested Pbr strains isolated from potato and vegetables grown in fields with a history of potato cultivation suggests that seed tubers imported from Europe may be the main source for Pbr in Israel. To the best of our knowledge, this is the first study that describes biodiversity and population structure of P. brasiliense isolated from potato and vegetables under hot climate conditions.     

Molecular Analysis of Phytophthora infestans (Mont.) de Bary from Chapingo,Mexico. Phylogeographic Referential

An Andean origin of Phytophthora infestans was originally based on written records, and recently inferred from mitochondrial and nuclear gene genealogies, which emphasize a common South American origin of the European isolates, and absence of the I-b haplotype in Mexico (recently identified in Tlaxcala, Mexico). In order to compare such results, we sequenced the nuclear genes β-tubulin, Ras, and Intron Ras, and rDNA ITS regions in 24 P. infestans genotypes isolated, identified, and selected, during three crop growing cycles in Chapingo, Mexico. The pathogen showed homology and 100 % sequence similarities to the ones reported for the Andes and Europe β-tubulin, Ras, and Intron Ras genes. Results for the ITS region were inconclusive. The molecular oomycete similarities from the three geographical regions (South America, Europe, and Mexico), and the Mexican genotypes characteristics reported in the species supports the hypothesis of the location of P. infestans diversity and a center of dispersal in the central highlands of Mexico.     

Glyphosate Sublethal Effects on the Population Dynamics of the Earthworm Eisenia fetida (Savigny, 1826)

Pesticides’ sublethal effects are not regularly taken into account when assessing agrochemical’s toxicity. With the objective of detecting chronic, sublethal effects of the widely used herbicide glyphosate, an experiment was performed using the earthworm Eisenia fetida as model organism. Earthworm adults were randomly assigned to three glyphosate treatments: control (no glyphosate), regular dose for perennial weeds, and double dose. Six E. fetida individuals were placed in each pot. Two random pots were taken weekly from each treatment and the number of adults, individual weight, number of cocoons, and presence and number of young earthworms were recorded. A matrix analysis was performed with the data. The matrix population model built showed that while the control population had a positive growth rate, both glyphosate treatments showed negative growth rates. The results suggest that under these sublethal effects, non-target populations are at risk of local extinction, underscoring the importance of this type of studies in agrochemical environmental risk assessment.     

Control of postharvest diseases on citrus fruit by preharvest applications of biocontrol agent Pantoea agglomerans CPA-2: Part II. Effectiveness of different cell formulations

Infection of citrus fruit by postharvest pathogens often occurs in the field prior to harvest; therefore, it could be advantageous to apply biocontrol agents before harvest, which would reduce initial infection and then remain active and control pathogens in storage and under commercial conditions. The objective of the present work was to evaluate the effectiveness of different formulations of Pantoea agglomerans applied preharvest for controlling postharvest diseases on citrus. Results confirmed the protective effect of the additive Fungicover (FC) on populations of P. agglomerans exposed to non-conducive field conditions. In general, when osmotic-adapted and lyophilised P. agglomerans cells were used in bacterial treatments, these treatments showed greater survival rates than treatments with non-osmotic-adapted or fresh cells under field conditions. However, this superiority was only found when Fungicover was also added to suspensions of bacterial treatments. Therefore, bacterial treatments with Fungicover had population levels of P. agglomerans cells 1.2 and 2.8 log CFU cm⁻² higher than bacterial treatments without Fungicover during field experiments. These results allowed us to conclude that it is possible to improve environmental stress tolerance and ecological competence of P. agglomerans cells by integrating certain formulation strategies. Consequently, the improved formulation of P. agglomerans provided an effective control for orange fruit against natural postharvest pathogen infections and artificial infections of Penicillium digitatum with values of decay reduction higher than 50%. These latter results also demonstrated that it is possible to control postharvest pathogens using bacterial preharvest treatments.     

Arabidopsis ethylene receptors have different roles in Fumonisin B1-induced cell death

Ethylene is a central signalling agent in mediating plant defence against pathogens. Mutations to the ethylene receptor ETR1 have been shown to alter susceptibility of plants to mycotoxin-induced cell death. Using Fumonisin B₁ (FB₁) to induce cell death, we demonstrate that the receptor mutant ein4-1 has a reduced rate of necrosis, potentially due to an upregulation of ETHYLENE RESPONSE FACTOR1. Mutations in other ethylene receptors differentially affected the expression of genes in the jasmonic and salicylic acid defence pathways. Together these data indicate that ethylene receptors do not have redundant roles in mediating FB₁-induced cell death.     

Influence of environmental conditions on the reproductive success and recruitment of the Argentine hake Merluccius hubbsi (southwestern Atlantic Ocean)

The Argentine hake Merluccius hubbsi represents the dominant demersal fish and one of the main fisheries in the Argentine Sea. We analyzed over 17 years (September 1997–February 2015) of satellite surface chlorophyll concentration (CHL) and sea surface temperature anomaly (SSTA) data in the main spawning (SUB) and nursery (SJG) areas of the Patagonian stock of M. hubbsi. The variability observed in these environmental conditions was related to interannual differences in the reproductive success of hake. CHL values were maximum during austral spring (October–November) and minimum during winter (June–August). Blooms started in late September and lasted on average 128 and 110 days at SUB and SJG, respectively. At SUB, average CHL at the time of reproduction, the day of occurrence of the maximum chlorophyll concentration, and fall SST anomalies were significantly related to recruitment (R_VPA) a year later and to two Larval Survival Indices (LSI_SSB and LSI_TEP) considered. At SJG, R_VPA, LSI_SSB, and LSI_TEP showed negative correlations with fall (March–May) SSTA. Total egg production was not related to fall SSTA or spring phytoplankton dynamics at SUB or SJG. Significant positive trends were observed in the time series of CHL and SSTA in the study area. The trends observed in CHL represent average increases of 40.7% and 35.7% since 1997 at SUB and SJG, respectively. The potential implications of long‐term changes in environmental conditions for hake reproductive success are discussed.     

Putting the pieces together: Recent growth,nutritional condition,and mortality of Engraulis anchoita larvae in the Southwest Atlantic

Dynamics of clupeiform fish populations such as anchovy are frequently impacted by environmental variations which can affect the success of the species recruitment. Herein, we have analyzed recent otolith growth rate, RNA/DNA nutritional condition index (sRD), and mortality rate of argentine anchovy larvae Engraulis anchoita from three different nursery areas in the Southwest Atlantic. We have evaluated the relationship between the environmental variables (abundance of copepod nauplii, temperature, chlorophyll‐a concentration, and abundance of E. anchoita larvae) and larval endogenous variables (size, weight, age, and otolith radius) to sRD and recent growth rate. Fast larval growth rates were observed toward the northern sector of the studied area, characterized by higher temperature. High values of sRD were associated with higher nauplii abundance in the proximity of coastal fronts. The larvae with the lowest growths and lowest minimum values of nutritional condition coincided with the area where there was less abundance of nauplii and higher larval mortality. Larval size and nauplii abundance were positive explanatory factors for both recent growth rate and sRD index. Temperature had a positive effect on recent growth rate and a negative effect on sRD index. This condition index was poorly explained in terms of model fit in comparison with the growth model. The results herein provided could be significant to better understand the recruitment of the species, as to determining favorable areas for the growth and survival of anchovy larvae.     

Sustainable sediment management in coastal infrastructures through an innovative technology: preliminary results of the MARINAPLAN PLUS LIFE project

Journal of Soils and Sediments - The paper aims to show the preliminary monitoring and field test results of the innovative technology tested in the framework of the MARINAPLAN PLUS LIFE project...     

Fragmentation patterns of the Caatinga drylands

Context

Biodiversity is modulated by the spatial structure of the landscape. Thus, landscape metrics can be useful indicators of biota integrity and vulnerability, helping in conservation and management decisions.

Objective

We performed the first quantitative analysis of the spatial structure of the Caatinga drylands. We estimated the habitat amount and the fragmentation pattern of this region using a multi-scale perspective.

Methods

Using the Brazilian official database of native remnants, we calculated the number and percentage of remaining fragments per size class and we describe how habitat amount changes along the landscape. By simulating different dispersal capacities, we estimated the functional connectivity among remnants. We also calculated the cumulative core area as a function of different edge effect widths.

Results

Caatinga is subdivided into 47,100 fragments. Although 91% of them are smaller than 500 ha, 720 fragments are larger than 10,000 ha, corresponding to 78% of the remaining vegetation. Potentially, 95% of the vegetation is accessible to species that can cross 1000 m of matrix. With one kilometer of edge effect, the core area is reduced to a quarter of the remaining vegetation. The habitat amount analyzes reinforced the regional differences in the spatial distribution of the remnants.

Conclusions

Caatinga remains well connected for species with moderate and high dispersal capacities. However much of its remaining area is vulnerable to anthropogenic disturbances. Expansion of the protected area network and effective natural resource management to avoid overexploitation of the remnants are key strategies for maintaining the Caatinga biodiversity and its services.